Indiana University Southeast BioInformatics Research Group Web Log. Monday, June 28, 2010. Wednesday June 23, 2010. New realities of IT investment or New Principles of IT investment, a new theme at Gartner.

Deleting jobs from the queue. Multiple and pair-wise sequence alignment. Alignment, mapping, and scaffolding.

Selectome is a database of positive selection based on a rigorous branch-site specific likelihood test. Positive selection is detected using CODEML. On all branches of animal gene trees. The web interface of Selectome enables queries according both to the results of positive selection tests, and to gene related criteria. Test results including positively selected sites can be visualized on the tree, and on the protein sequence alignment.

The Snf2 family is a large group of helicase-like proteins. Many of the well-studied members are core motor polypeptides within ATP-dependent chromatin remodelling complexes. This resource collects information and provides a sequence database for the Snf2 family. Paper describing Snf2 family bioinformatic analysis is published as open-access in NAR. Snf2net site updated with more information, fixes and improved interlinking within the database.

I am using Slackware 14. I installed the new dependency libvdpau from SBo, although it can be compiled from the script in -current, too. Similarly, I re-compiled and upgraded electricsheep and xscreensaver to their versions in -current. I liked to play the Quake III demo, occasionally.